Редакция Использование методики C0t для анализа геномов (подборка статей) от Пнд, 29/11/2010 - 23:02

Измерение размеров генома c помощью кинетики реассоциации

  • Kingsbury DT: Estimate of the genome size of various microorganisms. J Bacteriol 1969, 98(3):1400-1401. [pdf]
  • Lethback_1970 [pdf]
  • McFadden JJ, Butcher PD, Chiodini RJ, Hermon-Taylor J: Determination of genome size and DNA homology between an unclassified Mycobacterium species isolated from patients with Crohn's disease and other mycobacteria. J Gen Microbiol 1987, 133(1):211-214. [pdf]
  • Pearson WR, Smith SL, Wu JR, Bonner J: Kinetic determination of the genome size of the pea. Plant Physiol 1978, 62(1):112-115. [pdf]

Исторические статьи

  • Britten_1963 [pdf]
  • Britten RJ, Kohne DE: Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms. Science 1968, 161(841):529-540. [pdf]
  • Britten RJ, Davidson EH: Studies on nucleic acid reassociation kinetics: empirical equations describing DNA reassociation. Proc Natl Acad Sci U S A 1976, 73(2):415-419. [pdf]
  • Cavalieri_1961 [pdf]
  • David_1968 [pdf]
  • Davidson EH, Hough BR, Amenson CS, Britten RJ: General interspersion of repetitive with non-repetitive sequence elements in the DNA of Xenopus. J Mol Biol 1973, 77(1):1-23. [pdf]
  • Doty P, Marmur J, Eigner J, Schildkraut C: Strand Separation and Specific Recombination in Deoxyribonucleic Acids: Physical Chemical Studies. Proc Natl Acad Sci U S A 1960, 46(4):461-476. [pdf]
  • Entingh TD: DNA hybridization in the genus Drosophila. Genetics 1970, 66(1):55-68. [pdf]
  • Hanhan_1979_dissertation [pdf]
  • Hoyer_1964 [pdf]
  • Laird CD, McCarthy BJ: Molecular characterization of the Drosophila genome. Genetics 1969, 63(4):865-882. [pdf]
  • Marmur J, Lane D: Strand Separation and Specific Recombination in Deoxyribonucleic Acids: Biological Studies. Proc Natl Acad Sci U S A 1960, 46(4):453-461. [pdf]
  • Marmur_1963 [pdf]
  • McCarthy BJ, Bolton ET: An approach to the measurement of genetic relatedness among organisms. Proc Natl Acad Sci U S A 1963, 50:156-164. [pdf]
  • McConaughy BL, Laird CD, McCarthy BJ: Nucleic acid reassociation in formamide. Biochemistry 1969, 8(8):3289-3295. [pdf]
  • Schildkraut CL, Marmur J, Doty P: The formation of hybrid DNA molecules and their use in studies of DNA homologies. J Mol Biol 1961, 3:595-617. [pdf]
  • Subirana JA, Doty P: Kinetics of Renaturation of Denatured DNA. I. Spectrophotometric results. Biopolymers 1966, 4(2):171-187. [pdf]
  • Thrower KJ, Peacocke AR: Kinetic and spectrophotometric studies on the renaturation of deoxyribonucleic acid. Biochem J 1968, 109(4):543-557. [pdf]
  • Waring M, Britten RJ: Nucleotide sequence repetition: a rapidly reassociating fraction of mouse DNA. Science 1966, 154(750):791-794. [pdf]
  • Warner RC: Studies on polynucleotides synthesized by polynucleotide phosphorylase. III. Interaction and ultraviolet absorption. J Biol Chem 1957, 229(2):711-724. [pdf]
  • Wetmur JG, Davidson N: Kinetics of renaturation of DNA. J Mol Biol 1968, 31(3):349-370. [pdf]

Определение генетических различий между видами методом C0t

  • Ezaki_1989 [pdf]
  • Fujinaga K, Sekikawa K, Yamazaki H: Method for determination of nucleotide sequence homology between viral genomes by DNA reassociation kinetics. J Virol 1975, 15(3):466-470. [pdf]
  • Huys G, Denys R, Swings J: DNA-DNA reassociation and phenotypic data indicate synonymy between Aeromonas enteropelogenes Schubert et al. 1990 and Aeromonas trota Carnahan et al. 1991. Int J Syst Evol Microbiol 2002, 52(Pt 6):1969-1972. [pdf]
  • Kondo R, Yoshida T, Yuki Y, Hiroishi S: DNA-DNA reassociation among a bloom-forming cyanobacterial genus, Microcystis. Int J Syst Evol Microbiol 2000, 50 Pt 2:767-770. [pdf]

Статьи по исследованию геномов методом C0t

Реассоциация РНК

  • Geiduschek EP, Nakamoto T, Weiss SB: The enzymatic synthesis of RNA: complementary interaction with DNA. Proc Natl Acad Sci U S A 1961, 47:1405-1415. [pdf]
  • Greenberg JR, Perry RP: Hybridization properties of DNA sequences directing the synthesis of messenger RNA and heterogeneous nuclear RNA. J Cell Biol 1971, 50(3):774-786. [pdf]